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From PileLine

Genomic Position files

PileLine is capable to handle, filter and compare genomic position files (GP) including pileup, BED,GFF, or VCF files. Basically, GP are tabular files where the two first columns contain chromosome name and position coordinate. Additional optional fields may be added by users, see an example below:

10     118829     optional1     optional2     optional3     ...    
10     121207     optional1     optional2     optional3     ...
10     121337     optional1     optional2     optional3     ...
10     121636     optional1     optional2     optional3     ...