Sample Data
From PileLine
(Difference between revisions)
| Line 12: | Line 12: | ||
|-align="left" | |-align="left" | ||
!scope="row"| | !scope="row"| | ||
| - | [[Media:Control1Files.zip|Control1Files.zip]] | + | [[Media:Control1Files.zip|Control1Files.zip]] (36MB) |
| - | [[Media:Case1Files.zip|Case1Files.zip]] | + | [[Media:Case1Files.zip|Case1Files.zip]] (36MB) |
| - | [[Media:Control2Files.zip|Control2Files.zip]] | + | [[Media:Control2Files.zip|Control2Files.zip]] (38MB) |
| - | [[Media:Case2Files.zip|Case2Files.zip]] | + | [[Media:Case2Files.zip|Case2Files.zip]] (38MB) |
| Genotype data (.pileup) | | Genotype data (.pileup) | ||
| Line 25: | Line 25: | ||
'''Note: there is only data for the chromosome 10''' | '''Note: there is only data for the chromosome 10''' | ||
|-align="left" | |-align="left" | ||
| - | !scope="row"| [[Media:Hg18_hgnc_ensembl_genes.bed.zip|Hg18_hgnc_ensembl_genes.bed.zip]] | + | !scope="row"| [[Media:Hg18_hgnc_ensembl_genes.bed.zip|Hg18_hgnc_ensembl_genes.bed.zip]] (365KB) |
| Gene annotation (.bed file) | | Gene annotation (.bed file) | ||
| Ensembl Genes for the Human Genome 18 | | Ensembl Genes for the Human Genome 18 | ||
|-align="left" | |-align="left" | ||
| - | !scope="row"| [[Media:DbSNP_36.3.txt.zip|DbSNP_36.3.txt.zip]] | + | !scope="row"| [[Media:DbSNP_36.3.txt.zip|DbSNP_36.3.txt.zip]] (237MB) |
| SNP annotation (custom GP file in .txt) | | SNP annotation (custom GP file in .txt) | ||
| SNPs from dbSNP version 36.3 for the Human Genome 18 | | SNPs from dbSNP version 36.3 for the Human Genome 18 | ||
|} | |} | ||
Revision as of 12:08, 4 January 2011
Here you can find some files to test PileLine and PileLine GUI. All files are compressed. You need to uncompress them before use.
| File | Type | Description |
|---|---|---|
| hg18.tar.gz (892MB) | Genome (.fa and .fai) | Human Genome 18 in FASTA (.fa) and indexed FASTA (.fai). The sequence names are without the 'chr' prefix. |
|
Control1Files.zip (36MB) Case1Files.zip (36MB) Control2Files.zip (38MB) Case2Files.zip (38MB) | Genotype data (.pileup) | Several genotyped samples. each .zip file contains 2 files: a complete and a variants-only pileup.
Note: there is only data for the chromosome 10 |
| Hg18_hgnc_ensembl_genes.bed.zip (365KB) | Gene annotation (.bed file) | Ensembl Genes for the Human Genome 18 |
| DbSNP_36.3.txt.zip (237MB) | SNP annotation (custom GP file in .txt) | SNPs from dbSNP version 36.3 for the Human Genome 18 |
