Sample Data
From PileLine
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| - | Here you can find some files to test PileLine and PileLine GUI. | + | Here you can find some files to test PileLine and PileLine GUI. All files are compressed. You have to uncompress them before use. |
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Revision as of 11:58, 4 January 2011
Here you can find some files to test PileLine and PileLine GUI. All files are compressed. You have to uncompress them before use.
| File | Type | Description |
|---|---|---|
| hg18.tar.gz (892MB) | Genome (.fa and .fai) | Human Genome 18 in FASTA (.fa) and indexed FASTA (.fai). The sequence names are without the 'chr' prefix. |
| Genotype data (.pileup) | Several genotyped samples. each .zip file contains 2 files: a complete and a variants-only pileup.
Note: there is only data for the chromosome 10 | |
| Hg18_hgnc_ensembl_genes.bed.zip | Gene annotation (.bed file) | Ensembl Genes for the Human Genome 18 |
| DbSNP_36.3.txt.zip | SNP annotation (custom GP file in .txt) | SNPs from dbSNP version 36.3 for the Human Genome 18 |
