Quick Start
From PileLine
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| - | == | + | ==PipeLine input files== |
'''PileLine''' is capable to handle, filter and compare genomic position files (GP) including standard [http://samtools.sourceforge.net/pileup.shtml pileup], [http://genome.ucsc.edu/FAQ/FAQformat#format1 BED],[http://genome.ucsc.edu/FAQ/FAQformat#format3 GFF], or [http://1000genomes.org/wiki/doku.php?id=1000_genomes:analysis:vcfv3.2 VCF] files. | '''PileLine''' is capable to handle, filter and compare genomic position files (GP) including standard [http://samtools.sourceforge.net/pileup.shtml pileup], [http://genome.ucsc.edu/FAQ/FAQformat#format1 BED],[http://genome.ucsc.edu/FAQ/FAQformat#format3 GFF], or [http://1000genomes.org/wiki/doku.php?id=1000_genomes:analysis:vcfv3.2 VCF] files. | ||
| - | Basically, GP are tabular files where the two first columns contain chromosome name and position coordinate. | + | Basically, GP are tabular files where the two first columns contain chromosome name and position coordinate respectively. |
Additional optional fields may be added by users, see a GP file example below: | Additional optional fields may be added by users, see a GP file example below: | ||
10 118829 optional1 optional2 optional3 ... | 10 118829 optional1 optional2 optional3 ... | ||
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10 121337 optional1 optional2 optional3 ... | 10 121337 optional1 optional2 optional3 ... | ||
10 121636 optional1 optional2 optional3 ... | 10 121636 optional1 optional2 optional3 ... | ||
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| + | ==PipeLine Guided example== | ||
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| + | '''1.''' [[Media:Download]] GP example files (pileup format). | ||
Revision as of 13:38, 18 June 2010
PipeLine input files
PileLine is capable to handle, filter and compare genomic position files (GP) including standard pileup, BED,GFF, or VCF files.
Basically, GP are tabular files where the two first columns contain chromosome name and position coordinate respectively. Additional optional fields may be added by users, see a GP file example below:
10 118829 optional1 optional2 optional3 ... 10 121207 optional1 optional2 optional3 ... 10 121337 optional1 optional2 optional3 ... 10 121636 optional1 optional2 optional3 ...
PipeLine Guided example
1. Media:Download GP example files (pileup format).
