Quick Start
From PileLine
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==Genomic Position files== | ==Genomic Position files== | ||
| - | '''PileLine''' is capable to handle, filter and compare genomic position files (GP) including | + | '''PileLine''' is capable to handle, filter and compare genomic position files (GP) including standard [http://samtools.sourceforge.net/pileup.shtml pileup], [http://genome.ucsc.edu/FAQ/FAQformat#format1 BED],[http://genome.ucsc.edu/FAQ/FAQformat#format3 GFF], or [http://1000genomes.org/wiki/doku.php?id=1000_genomes:analysis:vcfv3.2 VCF] files. Basically, GP are tabular files where the two first columns contain chromosome name and position coordinate. Additional optional fields may be added by users, see a GP file example below: |
10 118829 optional1 optional2 optional3 ... | 10 118829 optional1 optional2 optional3 ... | ||
10 121207 optional1 optional2 optional3 ... | 10 121207 optional1 optional2 optional3 ... | ||
10 121337 optional1 optional2 optional3 ... | 10 121337 optional1 optional2 optional3 ... | ||
10 121636 optional1 optional2 optional3 ... | 10 121636 optional1 optional2 optional3 ... | ||
Revision as of 11:56, 18 June 2010
Genomic Position files
PileLine is capable to handle, filter and compare genomic position files (GP) including standard pileup, BED,GFF, or VCF files. Basically, GP are tabular files where the two first columns contain chromosome name and position coordinate. Additional optional fields may be added by users, see a GP file example below:
10 118829 optional1 optional2 optional3 ... 10 121207 optional1 optional2 optional3 ... 10 121337 optional1 optional2 optional3 ... 10 121636 optional1 optional2 optional3 ...
