Sample Data
From PileLine
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!scope="col"| Description | !scope="col"| Description | ||
|-align="left" | |-align="left" | ||
| - | !scope="row"| [http://sing.ei.uvigo.es/pileline/data/hg18. | + | !scope="row"| [http://sing.ei.uvigo.es/pileline/data/hg18.zip hg18.zip] (929MB) |
| Genome (.fa and .fai) | | Genome (.fa and .fai) | ||
| Human Genome 18 in FASTA (.fa) and indexed FASTA (.fai). The sequence names are without the 'chr' prefix. | | Human Genome 18 in FASTA (.fa) and indexed FASTA (.fai). The sequence names are without the 'chr' prefix. | ||
|-align="left" | |-align="left" | ||
!scope="row"| | !scope="row"| | ||
| - | [[Media:Control1Files.zip|Control1Files.zip]] | + | [[Media:Control1Files.zip|Control1Files.zip]] (36MB) |
| - | [[Media:Case1Files.zip|Case1Files.zip]] | + | [[Media:Case1Files.zip|Case1Files.zip]] (36MB) |
| - | [[Media:Control2Files.zip|Control2Files.zip]] | + | [[Media:Control2Files.zip|Control2Files.zip]] (38MB) |
| - | [[Media:Case2Files.zip|Case2Files.zip]] | + | [[Media:Case2Files.zip|Case2Files.zip]] (38MB) |
| Genotype data (.pileup) | | Genotype data (.pileup) | ||
| Line 25: | Line 25: | ||
'''Note: there is only data for the chromosome 10''' | '''Note: there is only data for the chromosome 10''' | ||
|-align="left" | |-align="left" | ||
| - | !scope="row"| [[Media:Hg18_hgnc_ensembl_genes.bed.zip|Hg18_hgnc_ensembl_genes.bed.zip]] | + | !scope="row"| [[Media:Hg18_hgnc_ensembl_genes.bed.zip|Hg18_hgnc_ensembl_genes.bed.zip]] (365KB) |
| Gene annotation (.bed file) | | Gene annotation (.bed file) | ||
| Ensembl Genes for the Human Genome 18 | | Ensembl Genes for the Human Genome 18 | ||
|-align="left" | |-align="left" | ||
| - | !scope="row"| [[Media:DbSNP_36.3. | + | !scope="row"| [[Media:DbSNP_36.3.bed.bgz.zip|DbSNP_36.3.bed.bgz.zip]] (150MB) |
| - | | SNP annotation (custom | + | | SNP annotation (custom in compressed (bgz) BED format) |
| SNPs from dbSNP version 36.3 for the Human Genome 18 | | SNPs from dbSNP version 36.3 for the Human Genome 18 | ||
| - | |||
|} | |} | ||
Latest revision as of 12:07, 12 January 2011
Here you can find some files to test PileLine and PileLine GUI. All files are compressed. You need to uncompress them before use.
| File | Type | Description |
|---|---|---|
| hg18.zip (929MB) | Genome (.fa and .fai) | Human Genome 18 in FASTA (.fa) and indexed FASTA (.fai). The sequence names are without the 'chr' prefix. |
|
Control1Files.zip (36MB) Case1Files.zip (36MB) Control2Files.zip (38MB) Case2Files.zip (38MB) | Genotype data (.pileup) | Several genotyped samples. each .zip file contains 2 files: a complete and a variants-only pileup.
Note: there is only data for the chromosome 10 |
| Hg18_hgnc_ensembl_genes.bed.zip (365KB) | Gene annotation (.bed file) | Ensembl Genes for the Human Genome 18 |
| DbSNP_36.3.bed.bgz.zip (150MB) | SNP annotation (custom in compressed (bgz) BED format) | SNPs from dbSNP version 36.3 for the Human Genome 18 |
