Sample data
From PileLine
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| - | PileLine GUI | + | You can get sample files to test PileLine GUI in our [[Sample_Data|Sample data]]. The following table shows which files are required for which functionality: |
| + | {| border="1" cellspacing="0" cellpadding="2" | ||
| + | |-align="left" | ||
| + | !scope="col"| Functionality | ||
| + | !scope="col"| Files | ||
| + | !scope="col"| Description | ||
| + | |-align="left" | ||
| + | !scope="row"| Somatic mutation calling | ||
| - | + | (2-smc and n-smc) | |
| + | | | ||
| + | |||
| + | [[Media:Control1Files.zip|Control1Files.zip]] (36MB) | ||
| + | |||
| + | [[Media:Case1Files.zip|Case1Files.zip]] (36MB) | ||
| + | |||
| + | [[Media:Control2Files.zip|Control2Files.zip]] (38MB) | ||
| + | |||
| + | [[Media:Case2Files.zip|Case2Files.zip]] (38MB) | ||
| + | |||
| + | | For 2-smc you need at least Control1 and Case1 files. For n-smc, you need all. | ||
| + | |||
| + | '''NOTE: This files have only information for the chromosome 10''' | ||
| + | |-align="left" | ||
| + | !scope="row"| Filter and annotation | ||
| + | | | ||
| + | [[Media:DbSNP_36.3.txt.zip|DbSNP_36.3.txt.zip]] (237MB) | ||
| + | |||
| + | [[Media:Hg18_hgnc_ensembl_genes.bed.zip|Hg18_hgnc_ensembl_genes.bed.zip]] (365KB) | ||
| + | | These files provide annotation and location for genes (Ensembl) and SNPs (dbSNP). You need to load the reference genome firstly. | ||
| + | |||
| + | |-align="left" | ||
| + | !scope="row"| Genome Browser | ||
| + | | [http://sing.ei.uvigo.es/pileline/data/hg18.zip hg18.zip] (929MB) | ||
| + | | Reference human genome (hg18). This file is required to use PileLine's genomic browser. Once it has been load then you can add tracks with GP data or annotation files. | ||
| + | |} | ||
Latest revision as of 10:12, 25 February 2011
You can get sample files to test PileLine GUI in our Sample data. The following table shows which files are required for which functionality:
| Functionality | Files | Description |
|---|---|---|
| Somatic mutation calling
(2-smc and n-smc) |
Control1Files.zip (36MB) Case1Files.zip (36MB) Control2Files.zip (38MB) Case2Files.zip (38MB) | For 2-smc you need at least Control1 and Case1 files. For n-smc, you need all.
NOTE: This files have only information for the chromosome 10 |
| Filter and annotation |
DbSNP_36.3.txt.zip (237MB) Hg18_hgnc_ensembl_genes.bed.zip (365KB) | These files provide annotation and location for genes (Ensembl) and SNPs (dbSNP). You need to load the reference genome firstly. |
| Genome Browser | hg18.zip (929MB) | Reference human genome (hg18). This file is required to use PileLine's genomic browser. Once it has been load then you can add tracks with GP data or annotation files. |
