Sample Data
From PileLine
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Here you can find some files to test PileLine and PileLine GUI. | Here you can find some files to test PileLine and PileLine GUI. | ||
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| - | !scope="row"| | + | !scope="row"| [http://sing.ei.uvigo.es/pileline/data/hg18.tar.gz hg18.tar.gz] (892MB) |
| - | | .fa and .fai | + | | Genome (.fa and .fai) |
| Human Genome 18 in FASTA (.fa) and indexed FASTA (.fai). The sequence names are without the 'chr' prefix. | | Human Genome 18 in FASTA (.fa) and indexed FASTA (.fai). The sequence names are without the 'chr' prefix. | ||
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| - | | | + | [[Media:Control1Files.zip|Control1Files.zip]] |
| - | | | + | |
| + | [[Media:Case1Files.zip|Case1Files.zip]] | ||
| + | |||
| + | [[Media:Control2Files.zip|Control2Files.zip]] | ||
| + | |||
| + | [[Media:Case2Files.zip|Case2Files.zip]] | ||
| + | |||
| + | | Genotype data (.pileup) | ||
| + | | Several genotyped samples. each .zip file contains 2 files: a complete and a variants-only pileup. | ||
| + | |||
| + | '''Note: there is only data for the chromosome 10''' | ||
| + | |-align="left" | ||
| + | !scope="row"| [[Media:Hg18_hgnc_ensembl_genes.bed.zip|Hg18_hgnc_ensembl_genes.bed.zip]] | ||
| + | | Gene annotation (.bed file) | ||
| + | | Ensembl Genes for the Human Genome 18 | ||
| + | |-align="left" | ||
| + | !scope="row"| [[Media:DbSNP_36.3.txt.zip|DbSNP_36.3.txt.zip]] | ||
| + | | SNP annotation (custom GP file in .txt) | ||
| + | | SNPs from dbSNP version 36.3 for the Human Genome 18 | ||
| + | |||
|} | |} | ||
Revision as of 11:57, 4 January 2011
Here you can find some files to test PileLine and PileLine GUI.
| File | Type | Description |
|---|---|---|
| hg18.tar.gz (892MB) | Genome (.fa and .fai) | Human Genome 18 in FASTA (.fa) and indexed FASTA (.fai). The sequence names are without the 'chr' prefix. |
| Genotype data (.pileup) | Several genotyped samples. each .zip file contains 2 files: a complete and a variants-only pileup.
Note: there is only data for the chromosome 10 | |
| Hg18_hgnc_ensembl_genes.bed.zip | Gene annotation (.bed file) | Ensembl Genes for the Human Genome 18 |
| DbSNP_36.3.txt.zip | SNP annotation (custom GP file in .txt) | SNPs from dbSNP version 36.3 for the Human Genome 18 |
