Sample data

Revision as of 10:05, 25 February 2011 by Ggomez (Talk | contribs)

You can get sample files to test PileLine GUI in our Sample data. The following table shows which files are required for which functionality:

Functionality

Files

Description

Somatic mutation calling

(2-smc and n-smc)

For 2-smc you need at least Control1 and Case1 files. For n-smc, you need all.

NOTE: This files have only information for the chromosome 10

Filter and annotation

You need to load the reference genome firstly. These files provide annotation and location for genes (Ensembl) and SNPs (dbSNP).

Genome Browser

hg18.zip (929MB)

Reference human genome (hg18). Load this file in the browser file. The you may load GP or annotation files.