GUI Quick Start

From PileLine

PileLineGUI Input Files

PileLineGUI is capable to handle, filter and compare genomic position files (GP) including standard pileup, BED,GFF, or VCF files.

Basically, GP are tabular files where the two first columns contain sequence name (i.e. chromosome name) and position coordinate respectively. Additional optional fields are accepted in PileLine, see an example of GP input file below:

chr10     118829     optional1     optional2     optional3     ...    
chr10     121207     optional1     optional2     optional3     ...
chr10     121337     optional1     optional2     optional3     ...
chr10     121636     optional1     optional2     optional3     ...