Sample data
From PileLine
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!scope="row"| Genome Browser | !scope="row"| Genome Browser | ||
| [http://sing.ei.uvigo.es/pileline/data/hg18.zip hg18.zip] (929MB) | | [http://sing.ei.uvigo.es/pileline/data/hg18.zip hg18.zip] (929MB) | ||
| - | | Reference human genome (hg18). | + | | Reference human genome (hg18). This file is required to use PileLine's genomic browser. Once it has been load then you can add tracks with GP data or annotation files. |
|} | |} | ||
Latest revision as of 10:12, 25 February 2011
You can get sample files to test PileLine GUI in our Sample data. The following table shows which files are required for which functionality:
| Functionality | Files | Description |
|---|---|---|
| Somatic mutation calling
(2-smc and n-smc) |
Control1Files.zip (36MB) Case1Files.zip (36MB) Control2Files.zip (38MB) Case2Files.zip (38MB) | For 2-smc you need at least Control1 and Case1 files. For n-smc, you need all.
NOTE: This files have only information for the chromosome 10 |
| Filter and annotation |
DbSNP_36.3.txt.zip (237MB) Hg18_hgnc_ensembl_genes.bed.zip (365KB) | These files provide annotation and location for genes (Ensembl) and SNPs (dbSNP). You need to load the reference genome firstly. |
| Genome Browser | hg18.zip (929MB) | Reference human genome (hg18). This file is required to use PileLine's genomic browser. Once it has been load then you can add tracks with GP data or annotation files. |
