Sample data
From PileLine
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[[Media:Hg18_hgnc_ensembl_genes.bed.zip|Hg18_hgnc_ensembl_genes.bed.zip]] (365KB) | [[Media:Hg18_hgnc_ensembl_genes.bed.zip|Hg18_hgnc_ensembl_genes.bed.zip]] (365KB) | ||
| - | | | + | | These files provide annotation and location for genes (Ensembl) and SNPs (dbSNP). You need to load the reference genome firstly. |
|-align="left" | |-align="left" | ||
Revision as of 10:06, 25 February 2011
You can get sample files to test PileLine GUI in our Sample data. The following table shows which files are required for which functionality:
| Functionality | Files | Description |
|---|---|---|
| Somatic mutation calling
(2-smc and n-smc) |
Control1Files.zip (36MB) Case1Files.zip (36MB) Control2Files.zip (38MB) Case2Files.zip (38MB) | For 2-smc you need at least Control1 and Case1 files. For n-smc, you need all.
NOTE: This files have only information for the chromosome 10 |
| Filter and annotation |
DbSNP_36.3.txt.zip (237MB) Hg18_hgnc_ensembl_genes.bed.zip (365KB) | These files provide annotation and location for genes (Ensembl) and SNPs (dbSNP). You need to load the reference genome firstly. |
| Genome Browser | hg18.zip (929MB) | Reference human genome (hg18). Load this file in the browser file. The you may load GP or annotation files. |
