GUI Quick Start
From PileLine
(Difference between revisions)
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| - | PileLine | + | ==PileLineGUI Input Files== |
| + | [[File:Glez_Peña_et_al_Figure2.png|right|thumb|PileLine commands and accepted input files.]] | ||
| + | '''PileLineGUI''' is capable to handle, filter and compare genomic position files (GP) including standard [http://samtools.sourceforge.net/pileup.shtml pileup], [http://genome.ucsc.edu/FAQ/FAQformat#format1 BED],[http://genome.ucsc.edu/FAQ/FAQformat#format3 GFF], or [http://1000genomes.org/wiki/doku.php?id=1000_genomes:analysis:vcfv3.2 VCF] files. | ||
| - | + | Basically, GP are tabular files where the two first columns contain sequence name (i.e. chromosome name) and position coordinate respectively. | |
| + | Additional optional fields are accepted in '''PileLine''', see an example of GP input file below: | ||
| + | chr10 118829 optional1 optional2 optional3 ... | ||
| + | chr10 121207 optional1 optional2 optional3 ... | ||
| + | chr10 121337 optional1 optional2 optional3 ... | ||
| + | chr10 121636 optional1 optional2 optional3 ... | ||
Revision as of 12:30, 21 February 2011
PileLineGUI Input Files
PileLineGUI is capable to handle, filter and compare genomic position files (GP) including standard pileup, BED,GFF, or VCF files.
Basically, GP are tabular files where the two first columns contain sequence name (i.e. chromosome name) and position coordinate respectively. Additional optional fields are accepted in PileLine, see an example of GP input file below:
chr10 118829 optional1 optional2 optional3 ... chr10 121207 optional1 optional2 optional3 ... chr10 121337 optional1 optional2 optional3 ... chr10 121636 optional1 optional2 optional3 ...
