Sample data

(Difference between revisions)

Revision as of 11:57, 21 February 2011

You can get sample files to test PileLine GUI in our Sample data. The following table shows which files are required for which functionality:

Functionality

Files

Description

Somatic mutation calling

(2-smc and n-smc)

For 2-smc you need at least Control1 and Case1 files. For n-smc, you need all.

NOTE: This files have only information for the chromosome 10

Filter and annotation

You need at least the genome file. In order to add tracks, you need GP files.

Genome Browser

hg18.zip (929MB)

You need at least the genome file. In order to add tracks, you need GP files.

@@ Line 1: / Line 1: @@
-PileLine GUI is under construction. We are currently working in PileLine GUI Quick Start. Sorry for the inconveniences.
+You can get sample files to test PileLine GUI in our [[Sample_Data|Sample data]]. The following table shows which files are required for which functionality:
+{| border="1" cellspacing="0" cellpadding="2"
+|-align="left"
+!scope="col"| Functionality
+!scope="col"| Files
+!scope="col"| Description
+|-align="left"
+!scope="row"| Somatic mutation calling
-The PileLine staff.
+(2-smc and n-smc)
+|
+[[Media:Control1Files.zip|Control1Files.zip]] (36MB)
+[[Media:Case1Files.zip|Case1Files.zip]] (36MB)
+[[Media:Control2Files.zip|Control2Files.zip]] (38MB)
+[[Media:Case2Files.zip|Case2Files.zip]] (38MB)
+| For 2-smc you need at least Control1 and Case1 files. For n-smc, you need all.
+'''NOTE: This files have only information for the chromosome 10'''
+|-align="left"
+!scope="row"| Filter and annotation
+|
+[[Media:DbSNP_36.3.txt.zip|DbSNP_36.3.txt.zip]] (237MB)
+[[Media:Hg18_hgnc_ensembl_genes.bed.zip|Hg18_hgnc_ensembl_genes.bed.zip]] (365KB)
+| You need at least the genome file. In order to add tracks, you need GP files.
+|-align="left"
+!scope="row"| Genome Browser
+| [http://sing.ei.uvigo.es/pileline/data/hg18.zip hg18.zip] (929MB)
+| You need at least the genome file. In order to add tracks, you need GP files.
+|}