BlasterJS

BlasterJS is a free to use, open source JavaScript based BLAST alignments viewer, with support for both single and multiple alignments.

This library allows you to:

  • Display BLAST hits distribution in the query sequence.
  • Display all hits with their measures on a table.
  • For all hits, you can visualize the singly alignment.
  • Export images and tables.
  • Use it everywhere: you can use BlasterJS on any web page. In addition, you can select which elements you want to display.
 
LA-iMageS

LA-iMageS is an open source, multi-platform application to generate 2D/3D images for the elements present in a set from ICP-MS (Inductively Coupled Plasma Mass Spectrometry) spectra.

LA-iMageS allows you to:

  • Extract the elements from the ICP-MS spectra.
  • Normalize the elements by a standard.
  • Generate custom 2D/3D representations of each element.
  • Export the results into images.

 
Compi

Compi is an extremely simple application framework for portable computational pipelines. A computational pipeline can be seen as a set of processing steps that run one after one (or ocassionally in parallel if they are independent). There are many fields where computational pipelines constitute the main architecture of applications, such as big data analysis or bioinformatics. Many pipelines combine third party tools along with custom made processes, conforming the final pipeline. Compi is the framework helping you to create the final - and portable - application.

The main features of Compi are:

  • Language agnostic: Compi pipelines are defined in XML, where each task is run in an external program written in any programming language.
  • Portable: thanks to Docker, pipelines can be packaged in a docker image along with their dependencies, making them really portable.
  • User interface generation: if you define your pipeline with Compi, a Command-Line user interface is provided for your users to run your pipeline.
  • Parallel execution: Compi pipelines run independent tasks in parallel, but you don't have to worry about parallel execution management, Compi does it for you.
 
MAHMI

The MAHMI Project (Mechanism of action of the human microbiome: from genetic sequences to immunomodulatory peptides), propose a step forward on the description and characterization of potential bioactive peptides encrypted in larger bacterial proteins. MAHMI contains a curated database of empiric data associating an amino acid sequence with antiproliferative or immunomodulatory bioactivity, which will be used for filtering the set of peptides generated. The biologic effect of some of the peptides showing the highest potential to be immunomodulatory or antiproliferative, will be characterised using cellular immune models (dendritic cells) or tumoral epithelial cell ines, coupled to a multi-omic analysis. These peptides could be useful in the treatment of Inflammatory Bowel Diseases or Colorectal Cancer.

In the close future, we hope that MAHMI Project will provide the user with a comparative tool for identifying the potential immunomodulatory or antiproliferative bioactivity of a submitted amino acidic sequence.

 
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