WhichGenes?

WhichGenes is a powerful gene set building tool. It allows the user to extract lists of genes from multiple sources in order to use them for further experiments.

WhichGenes is a bioinformatics gene set building tool. It allows the user to create and manage custom genesets extracted from several sources. Currently, WhichGenes can extract genes from:

homo sapiens

  • GeneCards Disease Genes. Uses Gene Cards disease genes query to retrive a gene list
  • Gene Ontology. Genes annotated whith a GO (via AmiGO)
  • KEGG Pathway. Genes involved in KEGG Pathways
  • Biocarta Pathway. Genes involved in Biocarta Pathways
  • Reactome Pathway. Genes involved in Reactome Pathways
  • MSigDB Positional GeneSets. GeneSets of the MSigDB's C1 Collection (GSEA)
  • TargetScan microRNA targets. Uses TargetScan to retrieve genes which are microRNA targets
  • Ensembl genes in bands. Uses Ensembl to provide genes in given locations or ranges
  • miRBase Targets. Uses miRBase Targets version 5 to retrieve genes as target of microRNAs
  • Chemical CTD. Chemical Interacting genes
  • Diseases CTD. Genes related with diseases via CTD
  • CancerGenes. Genes in Large-scale Sequencing Cancer Genome Projects via CancerGenes
  • IntAct interacting genes. Uses IntAct to get genes whose proteins interact with the protein of a given gene(s)
  • Sanger Decipher. Genes related to syndromes in Sanger's Decipher DB

mus musculus

  • KEGG Pathway. Genes involved in KEGG Pathways
  • Biocarta Pathway. Genes involved in Biocarta Pathways
  • Reactome Pathway. Genes involved in Reactome Pathways
  • Ensembl genes in bands. Uses Ensembl to provide genes in given locations or ranges
  • miRBase Targets. Uses miRBase Targets version 5 to retrieve genes as target of microRNAs
  • Chemical CTD. Chemical Interacting genes
  • Diseases CTD. Genes related with diseases via CTD

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2017 Sistemas Informáticos de Nueva Generación